![]() ![]() Running CMD: /data2/syspharm/projects/kaufman_ov/FUSION/STAR-fusion/STAR-Fusion/util/STAR-Fusion.map_chimeric_reads_to_genes -genome_lib_dir /data2/syspharm/projects/kaufman_ov/FUSION/STAR-fusion/STAR-Fusion/GRCh38_v27_CTAT_lib_Feb092018 -J /data2/syspharm/projects/kaufman_ov/RNAseq/150512_D00190_0260_BC76WUACXX/primary/STAR_cluster/star_output/2042A/2042A_ > /data2/syspharm/projects/kaufman_ov/FUSION/STAR-fusion/STAR-Fusion/star_fusion_outdir/star-fusion.preliminary/star-fusion.junction_breakpts_to_genes.txtĬan't locate JSON/XS.pm in ( contains: /data2/syspharm/projects/kaufman_ov/FUSION/STAR-fusion/STAR-Fusion/util/./PerlLib /data2/syspharm/opt/Perl-Modules/lib/perl5/x86_64-linux-thread-multi /data2/syspharm/opt/Perl-Modules/lib/perl5 /data2/syspharm/opt/Perl-Modules/lib/perl5//x86_64-linux-thread-multi /data2/syspharm/opt/Perl-Modules/lib/perl5/ /data2/syspharm/opt/Perl-Modules/lib/perl5/plib/ /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5.Perl STAR-Fusion -genome_lib_dir /data2/syspharm/projects/kaufman_ov/FUSION/STAR-fusion/STAR-Fusion/GRCh38_v27_CTAT_lib_Feb092018 -J /data2/syspharm/projects/kaufman_ov/RNAseq/150512_D00190_0260_BC76WUACXX/primary/STAR_cluster/star_output/2042A/2042A_ -output_dir /data2/syspharm/projects/kaufman_ov/FUSION/STAR-fusion/STAR-Fusion/star_fusion_outdir STAR-Fusion -genome_lib_dir /data2/syspharm/projects/kaufman_ov/FUSION/STAR-fusion/STAR-Fusion/GRCh38_v27_CTAT_lib_Feb092018 -J /data2/syspharm/projects/kaufman_ov/RNAseq/150512_D00190_0260_BC76WUACXX/primary/STAR_cluster/star_output/2042A/2042A_ -output_dir star_fusion_outdir error. Any input is very much appreciated! STAR-fusion installation I installed STAR-Fusion and tried a test run it but I get an error (see below). ![]()
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